Running questions

  • Below are some questions to revisit during further analysis
    • Should we look at data from last decade only rather than last 30 years?
    • How to structure this document
      • climate variable (MAT, MAP)
        • compare across symptoms (filtered?)
        • compare across ‘number of unhealthy trees’
        • compare across size class?
        • compare across site type?

Data Prep

Import data

Data downloaded manually from iNat.

Prepare dataset for extracting environmental data with climateNA

30 Normals

Import dataset with 30yr normals data

Merge data

Clean data

Add consistency to factors

Symptoms
##  [1] "Branch Dieback or 'Flagging'"                      
##  [2] "Browning Canopy"                                   
##  [3] "Extra Cone Crop"                                   
##  [4] "Healthy"                                           
##  [5] "Multiple Symptoms (please list in Notes)"          
##  [6] "New Dead Top (red or brown needles still attached)"
##  [7] "Old Dead Top (needles already gone)"               
##  [8] "Other (please describe in Notes)"                  
##  [9] "Thinning Canopy"                                   
## [10] "Tree is dead"                                      
## [11] "Yellowing Canopy"
Unhealthy trees
## [1] "0"            "1"            "2-3"          "4-6"          "7-10"        
## [6] "More than 10" "Not sure"
Tree size
## [1] ""                                                             
## [2] "Large (too big to wrap arms around trunk)"                    
## [3] "Medium (can wrap arms around trunk)"                          
## [4] "No selection"                                                 
## [5] "Other"                                                        
## [6] "Small (can wrap hands around trunk)"                          
## [7] "Very Large (would take many people to wrap arms around trunk)"

Filter data

Only include symptoms of interest

## [1] "Healthy"                                           
## [2] "New Dead Top (red or brown needles still attached)"
## [3] "Old Dead Top (needles already gone)"               
## [4] "Thinning Canopy"                                   
## [5] "Tree is dead"

Data Exploration

MAT

Symptoms

Site Severity
Size Class

MAP

Symptoms

AHM

Symptoms

SHM

Symptoms

Filtered SHM <200

MSP

Symptoms

CMD

Symptoms

Eref

Symptoms

Decade 2011-2020

Import dataset with Decade 2011-2020

Merge data

Clean data

Add consistency to factors

Symptoms
##  [1] "Branch Dieback or 'Flagging'"                      
##  [2] "Browning Canopy"                                   
##  [3] "Extra Cone Crop"                                   
##  [4] "Healthy"                                           
##  [5] "Multiple Symptoms (please list in Notes)"          
##  [6] "New Dead Top (red or brown needles still attached)"
##  [7] "Old Dead Top (needles already gone)"               
##  [8] "Other (please describe in Notes)"                  
##  [9] "Thinning Canopy"                                   
## [10] "Tree is dead"                                      
## [11] "Yellowing Canopy"
Unhealthy trees
## [1] "0"            "1"            "2-3"          "4-6"          "7-10"        
## [6] "More than 10" "Not sure"
Tree size
## [1] ""                                                             
## [2] "Large (too big to wrap arms around trunk)"                    
## [3] "Medium (can wrap arms around trunk)"                          
## [4] "No selection"                                                 
## [5] "Other"                                                        
## [6] "Small (can wrap hands around trunk)"                          
## [7] "Very Large (would take many people to wrap arms around trunk)"

Filter data

Only include symptoms of interest

## [1] "Healthy"                                           
## [2] "New Dead Top (red or brown needles still attached)"
## [3] "Old Dead Top (needles already gone)"               
## [4] "Thinning Canopy"                                   
## [5] "Tree is dead"

Data Exploration

MAT

Symptoms

Site Severity
Size Class

MAP

Symptoms

AHM

Symptoms

SHM

Symptoms

Filtered SHM <200

MSP

Symptoms

CMD

Symptoms

Eref

Symptoms

Large Trees on Severe sites

MSP

Symptoms

CMD

Symptoms

TOPO Data

Import TOPO Data

Merge data

Clean data

Add consistency to factors

Symptoms
##  [1] "Branch Dieback or 'Flagging'"                      
##  [2] "Browning Canopy"                                   
##  [3] "Extra Cone Crop"                                   
##  [4] "Healthy"                                           
##  [5] "Multiple Symptoms (please list in Notes)"          
##  [6] "New Dead Top (red or brown needles still attached)"
##  [7] "Old Dead Top (needles already gone)"               
##  [8] "Other (please describe in Notes)"                  
##  [9] "Thinning Canopy"                                   
## [10] "Tree is dead"                                      
## [11] "Yellowing Canopy"
Unhealthy trees
## [1] "0"            "1"            "2-3"          "4-6"          "7-10"        
## [6] "More than 10" "Not sure"
Tree size
## [1] ""                                                             
## [2] "Large (too big to wrap arms around trunk)"                    
## [3] "Medium (can wrap arms around trunk)"                          
## [4] "No selection"                                                 
## [5] "Other"                                                        
## [6] "Small (can wrap hands around trunk)"                          
## [7] "Very Large (would take many people to wrap arms around trunk)"

Filter data

Only include symptoms of interest

## [1] "Healthy"                                           
## [2] "New Dead Top (red or brown needles still attached)"
## [3] "Old Dead Top (needles already gone)"               
## [4] "Thinning Canopy"                                   
## [5] "Tree is dead"

Data Exploration

Aspect

Symptoms
##   [1] "id"                                                                                     
##   [2] "observed_on_string"                                                                     
##   [3] "observed_on"                                                                            
##   [4] "time_observed_at"                                                                       
##   [5] "time_zone"                                                                              
##   [6] "user_id"                                                                                
##   [7] "user_login"                                                                             
##   [8] "created_at"                                                                             
##   [9] "updated_at"                                                                             
##  [10] "quality_grade"                                                                          
##  [11] "license"                                                                                
##  [12] "url"                                                                                    
##  [13] "image_url"                                                                              
##  [14] "sound_url"                                                                              
##  [15] "tag_list"                                                                               
##  [16] "description"                                                                            
##  [17] "num_identification_agreements"                                                          
##  [18] "num_identification_disagreements"                                                       
##  [19] "captive_cultivated"                                                                     
##  [20] "oauth_application_id"                                                                   
##  [21] "place_guess"                                                                            
##  [22] "latitude"                                                                               
##  [23] "longitude"                                                                              
##  [24] "positional_accuracy"                                                                    
##  [25] "private_place_guess"                                                                    
##  [26] "private_latitude"                                                                       
##  [27] "private_longitude"                                                                      
##  [28] "public_positional_accuracy"                                                             
##  [29] "geoprivacy"                                                                             
##  [30] "taxon_geoprivacy"                                                                       
##  [31] "coordinates_obscured"                                                                   
##  [32] "positioning_method"                                                                     
##  [33] "positioning_device"                                                                     
##  [34] "place_town_name"                                                                        
##  [35] "place_county_name"                                                                      
##  [36] "place_state_name"                                                                       
##  [37] "place_country_name"                                                                     
##  [38] "place_admin1_name"                                                                      
##  [39] "place_admin2_name"                                                                      
##  [40] "species_guess"                                                                          
##  [41] "scientific_name"                                                                        
##  [42] "common_name"                                                                            
##  [43] "iconic_taxon_name"                                                                      
##  [44] "taxon_id"                                                                               
##  [45] "field.tree.canopy.symptoms"                                                             
##  [46] "field.optional...did.the.tree.have.heat.damage"                                         
##  [47] "field.percent.canopy.affected...."                                                      
##  [48] "field.number.of.additional.unhealthy.trees..of.same.species..in.area..within.sight."    
##  [49] "field.percent.of.trees..of.same.species..within.sight.that.are.unhealthy"               
##  [50] "field.other.factors...are.there.signs.or.symptoms.of.insect..diseases..or.other.damage."
##  [51] "field.optional...what..other.factors..were.observed."                                   
##  [52] "field.optional...tree.size"                                                             
##  [53] "field.optional...site.type"                                                             
##  [54] "field.optional...site.location.description"                                             
##  [55] "field.optional...site.area.disturbance.level"                                           
##  [56] "field.optional...site.hydrology"                                                        
##  [57] "field.optional...access.to.water"                                                       
##  [58] "field.optional...slope.position"                                                        
##  [59] "field.optional...were.there.any.other.unhealthy.plant.species.on.the.site."             
##  [60] "field.optional...timing.of.symptoms.estimate"                                           
##  [61] "field.optional...estimated.time.spent.to.make.this.observation....of.minutes."          
##  [62] "field.optional...can.we.follow.up.with.you."                                            
##  [63] "field.notes"                                                                            
##  [64] "X"                                                                                      
##  [65] "Latitude"                                                                               
##  [66] "Longitude"                                                                              
##  [67] "Elevation"                                                                              
##  [68] "Tmax01"                                                                                 
##  [69] "Tmax02"                                                                                 
##  [70] "Tmax03"                                                                                 
##  [71] "Tmax04"                                                                                 
##  [72] "Tmax05"                                                                                 
##  [73] "Tmax06"                                                                                 
##  [74] "Tmax07"                                                                                 
##  [75] "Tmax08"                                                                                 
##  [76] "Tmax09"                                                                                 
##  [77] "Tmax10"                                                                                 
##  [78] "Tmax11"                                                                                 
##  [79] "Tmax12"                                                                                 
##  [80] "Tmin01"                                                                                 
##  [81] "Tmin02"                                                                                 
##  [82] "Tmin03"                                                                                 
##  [83] "Tmin04"                                                                                 
##  [84] "Tmin05"                                                                                 
##  [85] "Tmin06"                                                                                 
##  [86] "Tmin07"                                                                                 
##  [87] "Tmin08"                                                                                 
##  [88] "Tmin09"                                                                                 
##  [89] "Tmin10"                                                                                 
##  [90] "Tmin11"                                                                                 
##  [91] "Tmin12"                                                                                 
##  [92] "Tave01"                                                                                 
##  [93] "Tave02"                                                                                 
##  [94] "Tave03"                                                                                 
##  [95] "Tave04"                                                                                 
##  [96] "Tave05"                                                                                 
##  [97] "Tave06"                                                                                 
##  [98] "Tave07"                                                                                 
##  [99] "Tave08"                                                                                 
## [100] "Tave09"                                                                                 
## [101] "Tave10"                                                                                 
## [102] "Tave11"                                                                                 
## [103] "Tave12"                                                                                 
## [104] "PPT01"                                                                                  
## [105] "PPT02"                                                                                  
## [106] "PPT03"                                                                                  
## [107] "PPT04"                                                                                  
## [108] "PPT05"                                                                                  
## [109] "PPT06"                                                                                  
## [110] "PPT07"                                                                                  
## [111] "PPT08"                                                                                  
## [112] "PPT09"                                                                                  
## [113] "PPT10"                                                                                  
## [114] "PPT11"                                                                                  
## [115] "PPT12"                                                                                  
## [116] "Rad01"                                                                                  
## [117] "Rad02"                                                                                  
## [118] "Rad03"                                                                                  
## [119] "Rad04"                                                                                  
## [120] "Rad05"                                                                                  
## [121] "Rad06"                                                                                  
## [122] "Rad07"                                                                                  
## [123] "Rad08"                                                                                  
## [124] "Rad09"                                                                                  
## [125] "Rad10"                                                                                  
## [126] "Rad11"                                                                                  
## [127] "Rad12"                                                                                  
## [128] "DD_0_01"                                                                                
## [129] "DD_0_02"                                                                                
## [130] "DD_0_03"                                                                                
## [131] "DD_0_04"                                                                                
## [132] "DD_0_05"                                                                                
## [133] "DD_0_06"                                                                                
## [134] "DD_0_07"                                                                                
## [135] "DD_0_08"                                                                                
## [136] "DD_0_09"                                                                                
## [137] "DD_0_10"                                                                                
## [138] "DD_0_11"                                                                                
## [139] "DD_0_12"                                                                                
## [140] "DD5_01"                                                                                 
## [141] "DD5_02"                                                                                 
## [142] "DD5_03"                                                                                 
## [143] "DD5_04"                                                                                 
## [144] "DD5_05"                                                                                 
## [145] "DD5_06"                                                                                 
## [146] "DD5_07"                                                                                 
## [147] "DD5_08"                                                                                 
## [148] "DD5_09"                                                                                 
## [149] "DD5_10"                                                                                 
## [150] "DD5_11"                                                                                 
## [151] "DD5_12"                                                                                 
## [152] "DD_18_01"                                                                               
## [153] "DD_18_02"                                                                               
## [154] "DD_18_03"                                                                               
## [155] "DD_18_04"                                                                               
## [156] "DD_18_05"                                                                               
## [157] "DD_18_06"                                                                               
## [158] "DD_18_07"                                                                               
## [159] "DD_18_08"                                                                               
## [160] "DD_18_09"                                                                               
## [161] "DD_18_10"                                                                               
## [162] "DD_18_11"                                                                               
## [163] "DD_18_12"                                                                               
## [164] "DD18_01"                                                                                
## [165] "DD18_02"                                                                                
## [166] "DD18_03"                                                                                
## [167] "DD18_04"                                                                                
## [168] "DD18_05"                                                                                
## [169] "DD18_06"                                                                                
## [170] "DD18_07"                                                                                
## [171] "DD18_08"                                                                                
## [172] "DD18_09"                                                                                
## [173] "DD18_10"                                                                                
## [174] "DD18_11"                                                                                
## [175] "DD18_12"                                                                                
## [176] "NFFD01"                                                                                 
## [177] "NFFD02"                                                                                 
## [178] "NFFD03"                                                                                 
## [179] "NFFD04"                                                                                 
## [180] "NFFD05"                                                                                 
## [181] "NFFD06"                                                                                 
## [182] "NFFD07"                                                                                 
## [183] "NFFD08"                                                                                 
## [184] "NFFD09"                                                                                 
## [185] "NFFD10"                                                                                 
## [186] "NFFD11"                                                                                 
## [187] "NFFD12"                                                                                 
## [188] "PAS01"                                                                                  
## [189] "PAS02"                                                                                  
## [190] "PAS03"                                                                                  
## [191] "PAS04"                                                                                  
## [192] "PAS05"                                                                                  
## [193] "PAS06"                                                                                  
## [194] "PAS07"                                                                                  
## [195] "PAS08"                                                                                  
## [196] "PAS09"                                                                                  
## [197] "PAS10"                                                                                  
## [198] "PAS11"                                                                                  
## [199] "PAS12"                                                                                  
## [200] "Eref01"                                                                                 
## [201] "Eref02"                                                                                 
## [202] "Eref03"                                                                                 
## [203] "Eref04"                                                                                 
## [204] "Eref05"                                                                                 
## [205] "Eref06"                                                                                 
## [206] "Eref07"                                                                                 
## [207] "Eref08"                                                                                 
## [208] "Eref09"                                                                                 
## [209] "Eref10"                                                                                 
## [210] "Eref11"                                                                                 
## [211] "Eref12"                                                                                 
## [212] "CMD01"                                                                                  
## [213] "CMD02"                                                                                  
## [214] "CMD03"                                                                                  
## [215] "CMD04"                                                                                  
## [216] "CMD05"                                                                                  
## [217] "CMD06"                                                                                  
## [218] "CMD07"                                                                                  
## [219] "CMD08"                                                                                  
## [220] "CMD09"                                                                                  
## [221] "CMD10"                                                                                  
## [222] "CMD11"                                                                                  
## [223] "CMD12"                                                                                  
## [224] "RH01"                                                                                   
## [225] "RH02"                                                                                   
## [226] "RH03"                                                                                   
## [227] "RH04"                                                                                   
## [228] "RH05"                                                                                   
## [229] "RH06"                                                                                   
## [230] "RH07"                                                                                   
## [231] "RH08"                                                                                   
## [232] "RH09"                                                                                   
## [233] "RH10"                                                                                   
## [234] "RH11"                                                                                   
## [235] "RH12"                                                                                   
## [236] "CMI01"                                                                                  
## [237] "CMI02"                                                                                  
## [238] "CMI03"                                                                                  
## [239] "CMI04"                                                                                  
## [240] "CMI05"                                                                                  
## [241] "CMI06"                                                                                  
## [242] "CMI07"                                                                                  
## [243] "CMI08"                                                                                  
## [244] "CMI09"                                                                                  
## [245] "CMI10"                                                                                  
## [246] "CMI11"                                                                                  
## [247] "CMI12"                                                                                  
## [248] "Tmax_wt"                                                                                
## [249] "Tmax_sp"                                                                                
## [250] "Tmax_sm"                                                                                
## [251] "Tmax_at"                                                                                
## [252] "Tmin_wt"                                                                                
## [253] "Tmin_sp"                                                                                
## [254] "Tmin_sm"                                                                                
## [255] "Tmin_at"                                                                                
## [256] "Tave_wt"                                                                                
## [257] "Tave_sp"                                                                                
## [258] "Tave_sm"                                                                                
## [259] "Tave_at"                                                                                
## [260] "PPT_wt"                                                                                 
## [261] "PPT_sp"                                                                                 
## [262] "PPT_sm"                                                                                 
## [263] "PPT_at"                                                                                 
## [264] "Rad_wt"                                                                                 
## [265] "Rad_sp"                                                                                 
## [266] "Rad_sm"                                                                                 
## [267] "Rad_at"                                                                                 
## [268] "DD_0_wt"                                                                                
## [269] "DD_0_sp"                                                                                
## [270] "DD_0_sm"                                                                                
## [271] "DD_0_at"                                                                                
## [272] "DD5_wt"                                                                                 
## [273] "DD5_sp"                                                                                 
## [274] "DD5_sm"                                                                                 
## [275] "DD5_at"                                                                                 
## [276] "DD_18_wt"                                                                               
## [277] "DD_18_sp"                                                                               
## [278] "DD_18_sm"                                                                               
## [279] "DD_18_at"                                                                               
## [280] "DD18_wt"                                                                                
## [281] "DD18_sp"                                                                                
## [282] "DD18_sm"                                                                                
## [283] "DD18_at"                                                                                
## [284] "NFFD_wt"                                                                                
## [285] "NFFD_sp"                                                                                
## [286] "NFFD_sm"                                                                                
## [287] "NFFD_at"                                                                                
## [288] "PAS_wt"                                                                                 
## [289] "PAS_sp"                                                                                 
## [290] "PAS_sm"                                                                                 
## [291] "PAS_at"                                                                                 
## [292] "Eref_wt"                                                                                
## [293] "Eref_sp"                                                                                
## [294] "Eref_sm"                                                                                
## [295] "Eref_at"                                                                                
## [296] "CMD_wt"                                                                                 
## [297] "CMD_sp"                                                                                 
## [298] "CMD_sm"                                                                                 
## [299] "CMD_at"                                                                                 
## [300] "RH_wt"                                                                                  
## [301] "RH_sp"                                                                                  
## [302] "RH_sm"                                                                                  
## [303] "RH_at"                                                                                  
## [304] "CMI_wt"                                                                                 
## [305] "CMI_sp"                                                                                 
## [306] "CMI_sm"                                                                                 
## [307] "CMI_at"                                                                                 
## [308] "MAT"                                                                                    
## [309] "MWMT"                                                                                   
## [310] "MCMT"                                                                                   
## [311] "TD"                                                                                     
## [312] "MAP"                                                                                    
## [313] "MSP"                                                                                    
## [314] "AHM"                                                                                    
## [315] "SHM"                                                                                    
## [316] "DD_0"                                                                                   
## [317] "DD5"                                                                                    
## [318] "DD_18"                                                                                  
## [319] "DD18"                                                                                   
## [320] "NFFD"                                                                                   
## [321] "bFFP"                                                                                   
## [322] "eFFP"                                                                                   
## [323] "FFP"                                                                                    
## [324] "PAS"                                                                                    
## [325] "EMT"                                                                                    
## [326] "EXT"                                                                                    
## [327] "MAR"                                                                                    
## [328] "Eref"                                                                                   
## [329] "CMD"                                                                                    
## [330] "RH"                                                                                     
## [331] "CMI"                                                                                    
## [332] "DD1040"
## Warning: Removed 36 rows containing non-finite values (stat_boxplot).

Slope

Symptoms
## Warning: Removed 36 rows containing non-finite values (stat_boxplot).

Elevation

Symptoms
## Warning: Removed 36 rows containing non-finite values (stat_boxplot).

Topo & Climate

Slope

CMD
## Warning: Removed 36 rows containing missing values (geom_point).

## `geom_smooth()` using method = 'loess' and formula 'y ~ x'
## Warning: Removed 36 rows containing non-finite values (stat_smooth).

## `geom_smooth()` using method = 'loess' and formula 'y ~ x'
## Warning: Removed 36 rows containing non-finite values (stat_smooth).

Elevation

##  [1] "field_1"     "id"          "lat"         "long"        "el"         
##  [6] "Aspect"      "Profilecurv" "Tangentialc" "Slope"       "PNWSRTMDEM"
## `geom_smooth()` using method = 'loess' and formula 'y ~ x'
## Warning: Removed 36 rows containing non-finite values (stat_smooth).

Binary Data

## [1] "Healthy"   "Unhealthy"

Topo

## `geom_smooth()` using method = 'loess' and formula 'y ~ x'
## Warning: Removed 36 rows containing non-finite values (stat_smooth).

## Warning: Removed 36 rows containing non-finite values (stat_boxplot).

Climate

Data Exploration

MAT

Symptoms

Site Severity
Size Class

MAP

AHM

SHM

Filtered SHM <200

MSP

Filtered SHM <200

CMD

Filtered SHM <200

Eref

###### Filtered SHM <200

Large Trees on Severe sites

MSP

CMD

Import Soils Data

##  [1] "OID_"                        "field_1"                    
##  [3] "ID2"                         "lat"                        
##  [5] "long"                        "el"                         
##  [7] "Aspect"                      "Profilecurv"                
##  [9] "Tangentialc"                 "Slope"                      
## [11] "PNWSRTMDEM"                  "RASTERVALU"                 
## [13] "VAT_MapunitRaster_10m_Count" "VAT_MapunitRaster_10m_MUKEY"
## [15] "muaggatt_OBJECTID"           "muaggatt_musym"             
## [17] "muaggatt_muname"             "muaggatt_mustatus"          
## [19] "muaggatt_slopegraddcp"       "muaggatt_slopegradwta"      
## [21] "muaggatt_brockdepmin"        "muaggatt_wtdepannmin"       
## [23] "muaggatt_wtdepaprjunmin"     "muaggatt_flodfreqdcd"       
## [25] "muaggatt_flodfreqmax"        "muaggatt_pondfreqprs"       
## [27] "muaggatt_aws025wta"          "muaggatt_aws050wta"         
## [29] "muaggatt_aws0100wta"         "muaggatt_aws0150wta"        
## [31] "muaggatt_drclassdcd"         "muaggatt_drclasswettest"    
## [33] "muaggatt_hydgrpdcd"          "muaggatt_iccdcd"            
## [35] "muaggatt_iccdcdpct"          "muaggatt_niccdcd"           
## [37] "muaggatt_niccdcdpct"         "muaggatt_engdwobdcd"        
## [39] "muaggatt_engdwbdcd"          "muaggatt_engdwbll"          
## [41] "muaggatt_engdwbml"           "muaggatt_engstafdcd"        
## [43] "muaggatt_engstafll"          "muaggatt_engstafml"         
## [45] "muaggatt_engsldcd"           "muaggatt_engsldcp"          
## [47] "muaggatt_englrsdcd"          "muaggatt_engcmssdcd"        
## [49] "muaggatt_engcmssmp"          "muaggatt_urbrecptdcd"       
## [51] "muaggatt_urbrecptwta"        "muaggatt_forpehrtdcp"       
## [53] "muaggatt_hydclprs"           "muaggatt_awmmfpwwta"        
## [55] "muaggatt_mukey"

Merge data

Add consistency to factors

Symptoms
##  [1] "Branch Dieback or 'Flagging'"                      
##  [2] "Browning Canopy"                                   
##  [3] "Extra Cone Crop"                                   
##  [4] "Healthy"                                           
##  [5] "Multiple Symptoms (please list in Notes)"          
##  [6] "New Dead Top (red or brown needles still attached)"
##  [7] "Old Dead Top (needles already gone)"               
##  [8] "Other (please describe in Notes)"                  
##  [9] "Thinning Canopy"                                   
## [10] "Tree is dead"                                      
## [11] "Yellowing Canopy"
Unhealthy trees
## [1] "0"            "1"            "2-3"          "4-6"          "7-10"        
## [6] "More than 10" "Not sure"
Tree size
## [1] ""                                                             
## [2] "Large (too big to wrap arms around trunk)"                    
## [3] "Medium (can wrap arms around trunk)"                          
## [4] "No selection"                                                 
## [5] "Other"                                                        
## [6] "Small (can wrap hands around trunk)"                          
## [7] "Very Large (would take many people to wrap arms around trunk)"

Filter data

Only include symptoms of interest

## [1] "Healthy"                                           
## [2] "New Dead Top (red or brown needles still attached)"
## [3] "Old Dead Top (needles already gone)"               
## [4] "Thinning Canopy"                                   
## [5] "Tree is dead"

Only include data with soils data

Only Washington has data currently

Data Exploration

Symptoms
Bedrock Depth
## Warning: Removed 410 rows containing non-finite values (stat_boxplot).

drclasscd

###### drclasswettest

###### hydgrpdcd

slopegradwta
## Warning: Removed 20 rows containing non-finite values (stat_boxplot).

niccdcdpct
## Warning: Removed 3 rows containing non-finite values (stat_boxplot).